I agree with above recommendations.
I am assuming that this happening on edge jointed, milled stock (S3S)? Blade marks are unavoidable if you are ripping rough stock for dimensioning...too many variables.
Also, do a cut removing just a small bit of the edge. i.e., set fence at 4 inches wide, rip, then set fence for 3 15/16 and rip. If the kerf is closing on the cut due to internal grain stress relief, it could be creating tooth marks/burning. The wood will not move appreciably on such a small cut.
If this problem is due to a fence alignment issue then the marks should tell which side of the blade is causing the problem, since the rear part of the blade is passing UP through the stock on a radiused curve and the front of the blade is passing DOWN on a radiused curve. The blade marks will tell the story.
The only other thing that comes quickly to mind is arbor/blade runout. You can check this with a dial indicator after you've verified alignment.
My Freud glue line rip blade (if that's the one you are using) will leave an impression on the wood but it is not a radiused curve such as you would see if the fence or a tooth is misaligned. I don't remember the exact impression, seems like it is sort of a waffle pattern. The pattern is very faint - not a deep swirl at all. However, the glue line rip blade will provide an edge that will in fact make a completely seamless glue joint. It just needs to be cleaned up if the edge is visible.
If that pattern isn't normal for a Freud Glue Line Rip blade then I got a bum one. :lol:
Hopefully it's just a fence alignment issue and will go away once corrected.
Chuck